(a) The polypeptide chain is show with a bound (NAG)6
substrate (green). The positions of the backbone Ca atoms are indicated
together with the side chains of the catalytic residues Asp 52 and Glu 35 (red)
and those that form disulfide bonds (yellow). The substrate’s sugar rings are
designated A, at its nonreducing end (right), through F, at its reducing end
(left). Lysozyme catalyzes the hydrolysis of the glycosidic bond between
residues D and E. Rings A, B, and C are observed in the X-ray structure of the
complex of (NAG)3 with lysozyme; the positions of rings D, E, and F were inferred
from model building studies.
(b) A ribbon diagram of lysozyme highlighting the protein’s secondary structure and indicating the positions of its catalytically important side chains.
(c) A computer-generated
model showing the protein’s molecular envelope (purple) and Ca backbone (blue).
The side chains of the catalytic residues, Asp 52 (above) and Glu 35 (below),
are colored yellow. Note the enzyme’s prominent substrate-binding cleft.
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